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Name in Thai : อาจารย์ ดร.นิลุบล คุรุบรรเจิดจิต

Name in English : Aj.Dr.Nilubon Kurubanjerdjit

Position : Lecturer

Tel : 053-91-6763

Room :306

E-mail : nilubon.kur@mfu.ac.th

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ประวัติ :

Brief Biographical History:

2014 – PhD Bioinformatics, Asia University, Taiwan.
2006 – Master of Information Technology, King Mongkutt’s University of Technology Thonburi, Bangkok, Thailand.
2001 – Bachelor of Computer Science, Maejo University, Thailand.

Areas of Interest:

Bioinformatics

Bio-medical Data Mining (Plant Pathogen, Human Cancers, Epigenetics, Translocation)

Protein-Protein Interaction Network

Microbiological Network Simulation

 

Granting, Award

May – Aug 2016  (4 months)  Postdoctoral fellowship  Research Institute of Oncology and Hematology  University of Manitoba, Canada “Modulation of gene pathway activity score of BNTC by drug treatment”

Apr – Jul 2014  (4 months)  Visiting Scholar Fellowship at Molecular Modeling Lab  Centre of Computing Bio molecular Science University of Nottingham, United Kingdom “A study of correlation of Delta-G and RMSD on a Pepstatin Binding to the Aspartyl Proteinase Penicillopepsin at different angstroms Resolution”

2009 – 2012  Ph.D. full scholarship from Asia University, Taiwan, PhD. Dissertation in the title of “In silico study of microRNA-regulated networks and host-pathogen interaction in Arabidopsis. Supported by the National Science Council (NSC) of Taiwan under the grants of NSC 99-2221-E-468-018-MY2

Publications

Journal:

Shujun Huang, Nilubon Kurubanjerdjit, Wayne Xu; Two opposing effects (Yin and Yang) determine cancer progression; Critical Reviews in Oncogenesis;DOI: 10.1615/CritRevOncog.2017020882 (2017)

 

Shun-Tsung Chen, Chien-Hung Huang, Victor C. Kok, Chi-Ying F. Huang, Jin-Shuei Ciou, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit, Ka-Lok Ng: Drug repurposing and therapeutic anti-micro RNA predictions for inhibition of oxidized low-density lipoprotein-induced vascular smooth muscle cell-associated diseases,Journal of Bioinformatics and Computational Biology, DOI: 10.1142/S0219720016500438 : Accepted: 11 December 2016.

 

Chien-Hung Huang, Jin-Shuei Ciou, Shun-Tsung Chen, Victor C. Kok, Yi Chung, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit, Chi-Ying F. Huang​, Ka-Lok Ng​: Identify potential drugs for cardiovascular diseases caused by stress-induced genes in vascular smooth muscle cells, PeerJ, Sep 2016,J 4:e2478; DOI 10.7717/peerj.2478.

 

Wen-Tsong Hsieh, Ke-Rung Tzeng, Jin-Shuei Ciou, Jeffrey JP Tsai, Nilubon Kurubanjerdjit, Chien-Hung Huang, and Ka-Lok Ng, “Transcription factor and microRNA-regulated network motifs for cancer and signal transduction networks”, BMC Syst Biol. 2015; 9(Suppl 1): S5.

 

Praveen Kumar Korla, Jack Cheng, Chien-Hung Huang, Jeffrey J P Tsai, Yu-Hsuan Liu, Nilubon Kurubanjerdjit, Wen-Tsong Hsieh, Huey-Yi Chen, Ka-Lok Ng, “FARE-CAFÉ: a database of functional and regulatory elements of cancer-associated fusion events”, Database (Oxford). 2015 Sep 16;2015. pii: bav086. doi: 10.1093/database/bav086. Print 2015.

 

Chien-Hung Huang, Jin-Shuei Ciou, Shun-Tsung Chen, Ke-Rung Tzeng, Jeffrey J.P.Tsai, Nilubon Kurubanjerdjit, Ka-Lok Ng, “Using Time-course Data to Identify Stress-and LDL-induced MicroRNA Target Genes for Vascular Smooth Muscle Cells“, Engineering Letters, December 2015, Vol.23 Issue 4, p307.

 

N. Kurubanjerdjit, J.S.Ciou, K.R. Tzeng, C.Y. Chen, J.J.P Tsai, C.H Huang, K.L Ng, “The Role of A.thaliana MicroRNA-Regulated Protein-Protein Interaction Networks in Plant-Pathogen Interaction Study”, IAENG International Journal of Computer Science41:2 (2014), pp.141-147.

 

N. Kurubanjerdjit, J.J.P.Tsai, C.H Huang, K.L Ng, “Disturbance of Arabidopsis thaliana microRNA-regulated pathways by Xcc bacterial effector proteins“, Amino Acids, 46:4 (2014), pp 953-961.

 

N. Kurubanjerdjit, J.J.P Tsai, C.Y. Sheu, K.L. Ng, “The prediction of protein-protein interaction of A.thaliana and X.campestris pv.campestris based on protein domain and interolog approaches”, Plant Omics Journal, 6:6 (2013), pp 388-398

 

N. Kurubanjerdjit, C.H. Huang, Y. Lee, J.J.P Tsai, K.L. Ng, “Prediction of microRNA-regulated protein interaction pathways in Arabidopsis using machine learning algorithms”, Computer in Biology and Medicine, 43:11 (2013), pp 1645-1652.

 

Book: 

Nilubon K. and Ka-Lok Ng; Bioinformatics analysis of microRNA and protein-protein interaction in plant host-pathogen interaction system; Advanced Series in Electrical and Compuer Engineering Vol.20 (Computational Methods with Applications in Bioinformatics Analysis),World Scientific Plublishing Co.Pte.Ltd. Singapore. 2017. https://doi.org/10.1142/9789813207981_0006

 

Conference:

2018

Nilubon K. ; IGCdb: An Integrative Genomic Cancer Database; 2018 The 15th International Joint Conference on Computer Science and Software Engineering (JCSSE2018); July 11-13 2018; Mahidol University, Salaya Campus, Nakhon Pathom, Thailand.

 

2017

(BEST PAPER WARD) Nilubon K. and Ka-Lok Ng; MicroRNA-regulated network motifs with Drug Association in Lung cancer;
2017 6th International Conference on Bioinformatics and Biomedical Science (ICBBS2017); June 22-24 2017; National University of Singapore, Singapore.

 

Jin-Shuei Ciou, Erwandy Lim, Wen-Hsiung Li, Jeffrey J.P. Tsai, Nilubon Kurubanjerdjit,Chien-Hung Huang † , Ka-Lok Ng: GEMtf – Database of Time-course Expression Profiles of Maize Transcription Factors by Using Biclustering Algorithm, (IMECS 2017), International MulitiConference of Engineers and Computer Scientists 2017, HongKong, 15-17 March 2017.

 

2016

Nilubon Kurubanjerdjit, Nattakarn Iam-On, Ka-Lok Ng: Discovery of MicroRNA-Regulated Protein Pathway As Bio-Marker for Lung Cancer,(MFUIC 2016) MFU International Conference on Advance in Medical and Health Sciences, 23-25 November 2016.

 

Chien-Hung Huang, Sheng-Jia Weng, Praveen Kumar Korla, Jywe-Fei Fang, Nilubon Kurubanjerdjit and Ka-Lok Ng, “Identification and analysis of palindromes for RNA sequences”, (BIBE2016): IEEE 16th International Conference on BioInformatics and BioEngineering, October 31- November 2, 2016, Taichung, Taiwan.

 

Jin-Shuei Ciou, Erwandy Lim, Jeffrey Tsai, W. H. Li, Nilubon Kurubanjerdjit and Ka-Lok Ng, “GEMtf- A Database of Genome-wide Expression Patterns of  Maize Transcription Factors”, (BIBE2016): IEEE 16th International Conference on BioInformatics and BioEngineering, October 31- November 2, 2016, Taichung, Taiwan.

 

Shun-Tsung Chen, Chien-Hung Huang, Victor C. Kok, Jin-Shuei Ciou, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit, Chi-Ying F. Huang and Ka-Lok Ng, “Drug repurposing and therapeutic anti-microRNA predictions in oxidized low-density lipoprotein-induced the proliferation of vascular smooth muscle cell associated diseases“,(GIW 2016): The 27th International Conference on Genome Informatics, Shanghai, China, October 3-5, 2016.

 

David Agustriawan, Chien-Hung Huang, Jim Jinn-Chyuan Sheu, Shan-Chih Lee, Jeffrey Tsai, Nilubon Kurubanjerdjit and Ka-Lok Ng “DNA Methylation-regulated microRNA Pathways in Ovarian Serous Cystadenocarcinoma: a Meta-analysis“, ,(GIW 2016): The 27th International Conference on Genome Informatics, Shanghai, China, October 3-5, 2016.

 

David Agustriawan, Ezra B.Wijaya, Chien-Hung Huang, Erwandy Lim, I-Chin Hsueh, Nilubon Kurubanjerdjit, Ke-Rung Tzeng, Ka-Lok Ng, “MethmiRbase: a Database of DNA Methylation and miRNA Expression in Human Cancer“, Proceeding of the International MultiConference of Engineering and Computer Scientists 2016, V.1, IMECS 2016, March 16-18, 2016, Hong Kong.

 

P. Watcharapasorn and N. Kurubanjerdjit, ” The Surgical Patient Mortality Rate Prediction by machine learning algorithms” in The International Joint Conference on Computer Science and Software Engineering (JCSSE), 2016.

 

P. Watcharapasorn and N. Kurubanjerdjit, ” Predicting surgical patient Infection Rate by machine learning algorithms on CNA Information” in Mae Fah Luang University International Conference (MFUIC 2016), 2016.

 

2015

(EXCELLENT PAPER AWARD)Nilubon Kurubanjerdjit, Natthakan Iam-On, Ka-Lok Ng (2015) “Identification of Lung Cancer Associated Protein by Molecular Complex Detection Analysis” 2015 APCBEES Taipei Conference, Taipei, 2015.1.24 -25

 

David Agustriawan, Ezra Bernardus Wijaya, Nilubon Kurubanjerdjit and Ka-Lok Ng, “In silico study of DNA methylation and microRNA association of serous cystadenocarcinoma by using meta-analysis”, Poster published in The Thirteenth Asia Pacific Bioinformatics Conference Hsinchu, Taiwan 2015.

 

Ezra Bernardus Wijaya, David Agustriawan, Nilubon Kurubanjerdjit and Ka-Lok Ng, “Integrated Analysis of DNA Methylation and miRNA Expression Data to Construct Epigenetic-regulated Pathways in Non-Small Cell Lung Cancer” Poster published in The Thirteenth Asia Pacific Bioinformatics Conference Hsinchu, Taiwan 2015.

 

2014

N. Kurubanjerdjit, C.Y. Chen, K.R. Tzeng, J.S. Ciou, J.J.P Tsai, C.H Huang, K.L. Ng. “In-Silico Study of the Role of Differentially Expressed Genes and MicroRNAs in Host-Pathogen Interaction“, Proceedings of the International MultiConference of Engineers and Computer Scientists 2014 Vol I (IMECS 2014), March 12-14, 2014, HongKong.

 

2013

N. Kurubanjerdjit, C.H. Huang, K.L. Ng “Identification of lung cancer associated protein by clique percolation clustering analysis” , Proceeding of the 2013 13 th International Symposium on Communications and Information Technologies (ISCIT) ,Septempber 4-6, 2013, Samui Island, Thailand.

 

N. Kurubanjerdjit, J.J.P. Tsai, J.S. Ciou, K.L. Ng “A Study of Floral Transition in Arabidopsis Using Partial Correlation Analysis” , Proceeding of the 2013 International Conference on Bioinformatics & Computational Biology (BIOCOMP’2013), July 22-25, 2013, Las Vegas, USA.

 

2012

N. Kurubanjerdjit, J.J.P. Tsai, J.S Ciou, K.L. Ng, “Gene Association Network of Floral Transition in Arabidopsis”, Proceedings of the 3rd International Conference on Bioscience and Bioinformatics (ICBB’12), December 29-31, 2012, Montreux, Switzerland.

 

(BEST PAPER AWARD) N. Kurubanjerdjit, J.J.P. Tsai, K.L. Ng, “Prediction of microRNA-regulated A.thaliana-Xcc protein interaction pathways“, Proceeding of the 2012 International Conference on Agricultural, Environment and Biological Sciences (ICAEBS’2012), May 26-27, 2012, Phuket, Thailand.

 

Research Outcome

IGCdb:Integrative Genomic Cancers Database

MicroRNA-Pharmacogenomics Database for Lung cancer  

 

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Post Author: Aj.Dr.Nilubon Kurubanjerdjit